The only differences are that in this online version, the endnote reference numbers are not yet in their continuous sequence, and these notes are still on the individual web pages instead of having been moved to the end. Also, the division into "scrolls" is tailored to the loading times of web pages and will be different in the e-books. Moreover, this online version is in full color whereas the printed version will be limited to black and white and some shades of gray.
To begin reading the book, click on the link below to its front page and then look for the blue "Continue" link at the bottom of each page to bring you to the next one. You can also reach each scroll directly from the links in the Table of Contents at phaistosgame.com/Phaistos01content.htm#Table_of_Contents
Start here: phaistosgame.com/Phaistos00titlepage.htm
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